Publications

Peters, K. M., & McMichael, R. H. (1987). Early life history of the red drum, Sciaenops ocellatus (Pisces: Sciaenidae), in Tampa Bay, Florida. Estuaries, 10(2), 92-107.

McMichael Jr, R. H., Peters, K. M., & Parsons, G. R. (1989). Early life history of the snook, Centropomus undecimalis, in Tampa Bay, Florida. Gulf of Mexico Science, 10(2), 5.

McMichael, R. H., & Peters, K. M. (1989). Early life history of spotted seatrout, Cynoscion nebulosus (Pisces: Sciaenidae), in Tampa Bay, Florida. Estuaries, 12(2), 98-110.

Murphy, M. D., & Taylor, R. G. (1989). Reproduction and growth of black drum, Pogonias cromis, in northeast Florida. Gulf of Mexico Science, 10(2), 6.

Peters, K. M., & McMichael Jr, R. H. (1990). Early life history of the black drum Pogonias cromis (Pisces: Sciaenidae) in Tampa Bay, Florida. Gulf of Mexico Science, 11(1), 5.

Tremain, D. M., & Adams, D. H. (1995). Seasonal variations in species diversity, abundance, and composition of fish communities in the northern Indian River Lagoon, Florida. Bulletin of Marine Science, 57(1), 171-192.

Paperno, R., Targett, T. E., & Grecay, P. A. (1997). Daily growth increments in otoliths of juvenile weakfish, Cynoscion regalis: experimental assessment of changes in increment width with changes in feeding rate, growth rate, and condition factor. Fishery Bulletin, 95(3), 521-529.

Wallin, J. E., Ransier, J. M., Fox, S., & McMichael Jr, R. H. (1997). Short-term retention of coded wire and internal anchor tags in juvenile common snook, Centropomus undecimalis. Fishery Bulletin, 95, 873-878.

Winner, B. L., & McMichael Jr, R. H. (1997). Evaluation of a new type of box splitter designed for subsampling estuarine ichthyofauna. Transactions of the American Fisheries Society, 126(6), 1041-1047.

Murphy, M. D., & Adams, D. H. (1998). Direct validation of ages determined for adult black drum, Pogonias cromis. Fishery Bulletin, 96, 382-387.

Peters, K. M., Matheson Jr, R. E., & Taylor, R. G. (1998). Reproduction and early life history of common snook, Centropomus undecimalis (Bloch), in Florida. Bulletin of Marine Science, 62(2), 509-529.

Nelson, G. A. (1998). Abundance, growth, and mortality of young-of-the-year pinfish, Lagodon rhomboides, in three estuaries along the gulf coast of Florida. Fishery Bulletin, 96(2), 315-328.

Adams, D. H., & McMichael Jr, R. H. (1999). Mercury levels in four species of sharks from the Atlantic coast of Florida. Fishery Bulletin, 97(2), 372-379.

Matheson, R. E., Camp, D. K., Sogard, S. M., & Bjorgo, K. A. (1999). Changes in seagrass-associated fish and crustacean communities on Florida Bay mud banks: the effects of recent ecosystem changes? Estuaries, 22(2), 534-551.

Winner, B. L. (1999). Evaluation of small T-anchor and dart tags for use in marking hatchery-reared juvenile. Fishery Bulletin, 97(3), 730.

2000

Adams, D. H., & Tremain, D. M. (2000). Association of large juvenile red drum, Sciaenops ocellatus, with an estuarine creek on the Atlantic coast of Florida. Environmental Biology of Fishes, 58(2), 183-194.

Paperno, R., Targett, T. E., & Grecay, P. A. (2000). Spatial and temporal variation in recent growth, overall growth, and mortality of juvenile weakfish (Cynoscion regalis) in Delaware Bay. Estuaries, 23(1), 10-20.

Rider, S. J., & Adams, D. H. (2000). Mercury Concentrations in Spotted Seatrout (Cynoscion nebulosus) from Northwest Florida. Gulf of Mexico Science, 18(2), 3.

2001

Kupschus, S., & Tremain, D. (2001). Associations between fish assemblages and environmental factors in nearshore habitats of a subtropical estuary. Journal of Fish Biology, 58(5), 1383-1403.

McBride, R. S., MacDonald, T. C., Richard Jr, E., Rydene, D. A., & Hood, P. B. (2001). Nursery habitats for ladyfish, Elops saurus, along salinity gradients in two Florida estuaries. Fishery Bulletin, 99(3), 443-443.

Nelson, G. A., & Leffler, D. (2001). Abundance, spatial distribution, and mortality of young-of-the-year spotted seatrout (Cynoscion nebulosus) along the Gulf Coast of Florida. Gulf of Mexico Science, 19(1), 3.

Paperno, R., Mille, K. J., & Kadison, E. (2001). Patterns in species composition of fish and selected invertebrate assemblages in estuarine subregions near Ponce de Leon Inlet, Florida. Estuarine, Coastal and Shelf Science, 52(1), 117-130.

Stevens, P. W., & Sulak, K. J. (2001). Egress of adult sport fish from an estuarine reserve within Merritt Island National Wildlife Refuge, Florida. Gulf of Mexico Science, 19(2), 1.

2002

Lehnert, R. L., & Allen, D. M. (2002). Nekton use of subtidal oyster shell habitat in a southeastern US estuary. Estuaries, 25(5), 1015-1024.

Nelson, G. A. (2002). Age, growth, mortality, and distribution of pinfish (Lagodon rhomboides) in Tampa Bay and adjacent Gulf of Mexico waters. Fishery Bulletin, 100,582-592.

Paperno, R. (2002). Age-0 spot (Leiostomus xanthurus) from two estuaries along central Florida's east coast: comparisons of the timing of recruitment, seasonal changes in abundance, and rates of growth and mortality. Florida Scientist, 65, 85-99.

Parkyn, D. C., Murie, D. J., & Sherwood, E. T. (2002). Salinity preference in hatchery-reared juvenile red drum. The Scientific World JOURNAL, 2, 1334-1339.

Poulakis, G. R., Shenker, J. M., & Scott Taylor, D. (2002). Habitat use by fishes after tidal reconnection of an impounded estuarine wetland in the Indian River Lagoon, Florida (USA). Wetlands Ecology and Management, 10(1), 51-69.

Seitz, J. C., & Poulakis, G. R. (2002). Recent occurrence of sawfishes (Elasmobranchiomorphi: Pristidae) along the southwest coast of Florida (USA). Florida Scientist, 65, 256-266.

Tsou, T. S., & Matheson, R. E. (2002). Seasonal changes in the nekton community of the Suwannee River estuary and the potential impacts of freshwater withdrawal. Estuaries, 25(6), 1372-1381.

2003

Bert, T. M., Leber, K. M., McMichael Jr, R. H., Neidig, C. L., Cody, R. P., Forstchen, A. B., ... & Kennedy, F. S. (2001). Evaluating stock enhancement strategies: a multi-disciplinary approach. Ecology of Aquaculture Apecies and Enhancement of Stocks, 105p.

Greenwood, M. F. D., & Hill, A. S. (2003). Temporal, spatial and tidal influences on benthic and demersal fish abundance in the Forth estuary. Estuarine, Coastal and Shelf Science, 58(2), 211-225.

Krebs, J. M., & Turingan, R. G. (2003). Intraspecific variation in gape–prey size relationships and feeding success during early ontogeny in red drum, Sciaenops ocellatus. Environmental Biology of Fishes, 66(1), 75-84.

Poulakis, G. R., Blewett, D. A., & Mitchell, M. E. (2003). The effects of season and proximity to fringing mangroves on seagrass-associated fish communities in Charlotte Harbor, Florida. Gulf of Mexico Science, 21(2), 3.

Rydene, D. A., & Matheson Jr, R. E. (2003). Diurnal fish density in relation to seagrass and drift algae cover in Tampa Bay, Florida. Gulf of Mexico Science, 21(1), 4.

Wessel, M. R., & Winner, B. L. (2003). Using a modified purse seine to collect and monitor estuarine fishes. Gulf and Caribbean Research, 15(1), 61-71.

2004

Adams, A. J., & Blewett, D. A. (2004). Spatial patterns of estuarine habitat type use and temporal patterns in abundance of juvenile permit, Trachinotus falcatus, in Charlotte Harbor, Florida. Gulf and Caribbean Research, 16(2), 129-139.

Kupschus, S. (2004). A temperature-dependent reproductive model for spotted seatrout (Cynoscion nebulosus) explaining spatio-temporal variations in reproduction and young-of-the-year recruitment in Florida estuaries. ICES Journal of Marine Science, 61(1), 3-11.

Paperno, R., & Brodie, R. B. (2004). Effects of environmental variables upon the spatial and temporal structure of a fish community in a small, freshwater tributary of the Indian River Lagoon, Florida. Estuarine, Coastal and Shelf Science, 61(2), 229-241.

Poulakis, G. R., Matheson Jr, R. E., Mitchell, M. E., Blewett, D. A., & Idelberger, C. F. (2004). Fishes of the Charlotte Harbor estuarine system, Florida. Gulf of Mexico Science, 22(2), 1.

Poulakis, G. R., & Seitz, J. C. (2004). Recent occurrence of the smalltooth sawfish, Pristis pectinata (Elasmobranchiomorphi: Pristidae), in Florida Bay and the Florida Keys, with comments on sawfish ecology. Florida Scientist, 67, 27-35.

Powell, A. B., Cheshire, R. T., Laban, E. H., Colvocoresses, J., O'Donnell, P., & Davidian, M. (2004). Growth, mortality, and hatchdate distributions of larval and juvenile spotted seatrout (Cynoscion nebulosus) in Florida Bay, Everglades National Park. Fishery Bulletin, 102:142-155.

Tremain, D. M., Harnden, C. W., & Adams, D. H. (2004). Multidirectional movements of sportfish species between an estuarine no-take zone and surrounding waters of the Indian River Lagoon, Florida. Fishery Bulletin, 102:533-544.

2005

Adams, D. H., & Onorato, G. V. (2005). Mercury concentrations in red drum, Sciaenops ocellatus, from estuarine and offshore waters of Florida. Marine Pollution Bulletin, 50(3), 291-300.

Idelberger, C. F., & Greenwood, M. F. (2005). Seasonal variation in fish assemblages within the estuarine portions of the Myakka and Peace rivers, southwest Florida. Gulf of Mexico Science, 23(2), 9.

2006

Blewett, D. A., Hensley, R. A., & Stevens, P. W. (2006). Feeding habits of common snook, Centropomus undecimalis, in Charlotte Harbor, Florida. Gulf and Caribbean Research, 18(1), 1-14.

Greenwood, M. F., Stevens, P. W., & Matheson, R. E. (2006). Effects of the 2004 hurricanes on the fish assemblages in two proximate southwest Florida estuaries: change in the context of interannual variability. Estuaries and Coasts, 29(6), 985-996.

Nemeth, D. J., Jackson, J. B., Knapp, A. R., & Purtlebaugh, C. H. (2006). Age and growth of sand seatrout (Cynoscion arenarius) in the estuarine waters of the eastern Gulf of Mexico. Gulf of Mexico Science, 24(1), 7.

Paperno, R., Tremain, D. M., Adams, D. H., Sebastian, A. P., Sauer, J. T., & Dutka-Gianelli, J. (2006). The disruption and recovery of fish communities in the Indian River Lagoon, Florida, following two hurricanes in 2004. Estuaries and Coasts, 29(6), 1004-1010.

Seitz, J. C., & Poulakis, G. R. (2006). Anthropogenic effects on the smalltooth sawfish (Pristis pectinata) in the United States. Marine Pollution Bulletin, 52(11), 1533-1540.

Solomon, J. J., Brodie, R. B., & Ehlinger, G. S. (2006). Distribution and abundance of fish assemblages and select macroinvertebrates from the lower St. Marys River basin in northeast Florida. Florida Scientist, 69, 1-18.

Stevens, P. W. (2006). Sampling fish communities in saltmarsh impoundments in the northern Indian River Lagoon, Florida: cast net and culvert trap gear testing. Florida Scientist, 69, 135-147.

Stevens, P. W., Blewett, D. A., & Casey, J. P. (2006). Short-term effects of a low dissolved oxygen event on estuarine fish assemblages following the passage of Hurricane Charley. Estuaries and Coasts, 29(6), 997-1003.

Stevens, P. W., Fox, S. L., & Montague, C. L. (2006). The interplay between mangroves and saltmarshes at the transition between temperate and subtropical climate in Florida. Wetlands Ecology and Management, 14(5), 435-444.

Stevens, P. W., Montague, C. L., & Sulak, K. J. (2006). Fate of fish production in a seasonally flooded saltmarsh. Marine Ecology Progress Series, 327, 267-277.

Stevens, P. W., Montague, C. L., & Sulak, K. J. (2006). Patterns of fish use and piscivore abundance within a reconnected saltmarsh impoundment in the northern Indian River Lagoon, Florida. Wetlands Ecology and Management, 14(2), 147-166.

Switzer, T. S., Chesney, E. J., & Baltz, D. M. (2006). Exploring temporal and spatial variability in Nekton community structure in the northern Gulf of Mexico: unraveling the potential influence of hypoxia. 57th Gulf and Caribbean Fisheries Institute, 699-715.

Switzer, T. S., Winner, B. L., Dunham, N. M., Whittington, J. A., & Thomas, M. (2006). Influence of sequential hurricanes on nekton communities in a southeast Florida estuary: short-term effects in the context of historical variations in freshwater inflow. Estuaries and Coasts, 29(6), 1011-1018.

Tuckey, T. D., & Dehaven, M. (2006). Fish assemblages found in tidal-creek and seagrass habitats in the Suwannee River estuary. Fishery Bulletin, 104:102-117.

2007

Acosta, A., Bartels, C., Colvocoresses, J., & Greenwood, M. F. D. (2007). Fish assemblages in seagrass habitats of the Florida Keys, Florida: Spatial and temporal characteristics. Bulletin of Marine Science, 81(1), 1-19.

Adams, D. H., & McMichael, R. H. (2007). Mercury in king mackerel, Scomberomorus cavalla, and Spanish mackerel, S. maculatus, from waters of the south-eastern USA: regional and historical trends. Marine and Freshwater Research, 58(2), 187-193.

Casey, J. P., Poulakis, G. R., & Stevens, P. W. (2007). Habitat use by juvenile gag, Mycteroperca microlepis (Pisces: Serranidae), in subtropical Charlotte Harbor, Florida (USA). Gulf and Caribbean Research, 19(1), 1-9.

Colvocoresses, J., & Acosta, A. (2007). A large-scale field comparison of strip transect and stationary point count methods for conducting length-based underwater visual surveys of reef fish populations. Fisheries Research, 85(1-2), 130-141.

Faunce, C. H., & Serafy, J. E. (2007). Nearshore habitat use by gray snapper (Lutjanus griseus) and bluestriped grunt (Haemulon sciurus): environmental gradients and ontogenetic shifts. Bulletin of Marine Science, 80(3), 473-495.

Greenwood, M. F., Idelberger, C. F., & Stevens, P. W. (2007). Habitat associations of large-bodied mangrove-shoreline fishes in a southwest Florida estuary and the effects of hurricane damage. Bulletin of Marine Science, 80(3), 805-821.

Greenwood, M. F. (2007). Nekton community change along estuarine salinity gradients: can salinity zones be defined?. Estuaries and Coasts, 30(3), 537-542.

Greenwood, M. F. D., Matheson Jr, R. E., McMichael Jr, R. H., & MacDonald, T. C. (2007). Community structure of shoreline nekton in the estuarine portion of the Alafia River, Florida: Differences along a salinity gradient and inflow-related changes. Estuarine, Coastal and Shelf Science, 74(1-2), 223-238.

Jackson, J. B., & Nemeth, D. J. (2007). A new method to describe seagrass habitat sampled during fisheries-independent monitoring. Estuaries and Coasts, 30(1), 171-178.

Keenan, S. F., Benfield, M. C., & Blackburn, J. K. (2007). Importance of the artificial light field around offshore petroleum platforms for the associated fish community. Marine Ecology Progress Series, 331, 219-231.

Purtlebaugh, C. H., & Rogers, K. R. (2007). Recruitment and essential habitat of juvenile sand seatrout (Cynoscion arenarius) in four estuaries along the west coast of Florida. Gulf of Mexico Science, 25(1), 3.

Stevens, P. W., Blewett, D. A., & Poulakis, G. R. (2007). Variable habitat use by juvenile common snook, Centropomus undecimalis (Pisces: Centropomidae): applying a life-history model in a southwest Florida estuary. Bulletin of Marine Science, 80(1), 93-108.

Vecchio, J. L., & Wenner, C. A. (2007). Catch-and-release mortality in subadult and adult red drum captured with popular fishing hook types. North American Journal of Fisheries Management, 27(3), 891-899.

Whaley, S. D., Burd Jr, J. J., & Robertson, B. A. (2007). Using estuarine landscape structure to model distribution patterns in nekton communities and in juveniles of fishery species. Marine Ecology Progress Series, 330, 83-99.

2008

Knapp, A. R., & Purtlebaugh, C. H. (2008). Relative abundance and distribution of Sand Seatrout (Cynoscion arenarius) in relation to environmental conditions, habitat, and river discharge in two Florida estuaries. Gulf of Mexico Science, 26(2), 1.

Paperno, R., Ruiz-Carus, R., Krebs, J. M., & McIvor, C. C. (2008). Range expansion of the Mayan cichlid, Cichlasoma urophthalmus (Pisces, Cichlidae), above 28° N latitude in Florida. Florida Scientist, 71, 293-304.

Simpfendorfer, C. A., Poulakis, G. R., O’Donnell, P. M., & Wiley, T. R. (2008). Growth rates of juvenile smalltooth sawfish Pristis pectinata Latham in the western Atlantic. Journal of Fish Biology, 72(3), 711-723.

Tringali, M. D., Leber, K. M., Halstead, W. G., Mcmichael, R., O'hop, J., Winner, B., ... & Barbieri, L. (2008). Marine stock enhancement in Florida: a multi-disciplinary, stakeholder-supported, accountability-based approach. Reviews in Fisheries Science, 16(1-3), 51-57.

2009

Adams, D. H. (2009). Consistently low mercury concentrations in dolphinfish, Coryphaena hippurus, an oceanic pelagic predator. Environmental Research, 109(6), 697-701.

Blewett, D. A., Stevens, P. W., Champeau, T. R., & Taylor, R. G. (2009). Use of rivers by common snook Centropomus undecimalis in southwest Florida: a first step in addressing the overwintering paradigm. Florida Scientist, 72, 310-324.

Champeau, T. R., Stevens, P. W., & Blewett, D. A. (2009). Comparison of fish community metrics to assess long-term changes and hurricane impacts at Peace River, Florida. Florida Scientist, 72, 289-309.

Martin, S. B., Hitch, A. T., Purcell, K. M., Klerks, P. L., & Leberg, P. L. (2009). Life history variation along a salinity gradient in coastal marshes. Aquatic Biology, 8(1), 15-28.

Peebles, E. B., & Greenwood, M. F. (2009). Spatial abundance quantiles as a tool for assessing habitat compression in motile estuarine organisms. Florida Scientist, 72, 277-288.

Snodgrass, D., & Harnden, C. W. (2009). Composition of fish species on ocean-side beach habitats in the Florida Keys. Florida Scientist, 72, 153-170.

Solomon, J. J., & Tremain, D. M. (2009). Recruitment timing and spatial patterns of estuarine use by young-of-the-year Florida pompano, Trachinotus carolinus, in northeastern Florida. Bulletin of Marine Science, 85(2), 133-148.

Switzer, T. S., Chesney, E. J., & Baltz, D. M. (2009). Habitat selection by flatfishes in the northern Gulf of Mexico: implications for susceptibility to hypoxia. Journal of Experimental Marine Biology and Ecology, 381, S51-S64.

2010

Adams, D. H., Sonne, C., Basu, N., Dietz, R., Nam, D. H., Leifsson, P. S., & Jensen, A. L. (2010). Mercury contamination in spotted seatrout, Cynoscion nebulosus: an assessment of liver, kidney, blood, and nervous system health. Science of the Total Environment, 408(23), 5808-5816.

Adams, D. H. (2010). Mercury in wahoo, Acanthocybium solandri, from offshore waters of the southeastern United States and the Bahamas. Marine Pollution Bulletin, 60(1), 148-151.

Brown, H., Benfield, M. C., Keenan, S. F., & Powers, S. P. (2010). Movement patterns and home ranges of a pelagic carangid fish, Caranx crysos, around a petroleum platform complex. Marine Ecology Progress Series, 403, 205-218.

Purtlebaugh, C. H., & Allen, M. S. (2010). Relative abundance, growth, and mortality of five age-0 estuarine fishes in relation to discharge of the Suwannee River, Florida. Transactions of the American Fisheries Society, 139(4), 1233-1246.

Stevens, P. W., Blewett, D. A., Champeau, T. R., & Stafford, C. J. (2010). Posthurricane recovery of riverine fauna reflected in the diet of an apex predator. Estuaries and Coasts, 33(1), 59-66.

Stevens, P. W., Greenwood, M. F., Idelberger, C. F., & Blewett, D. A. (2010). Mainstem and backwater fish assemblages in the tidal Caloosahatchee River: implications for freshwater inflow studies. Estuaries and Coasts, 33(5), 1216-1224.

Winner, B. L., Blewett, D. A., McMichael Jr, R. H., & Guenther, C. B. (2010). Relative abundance and distribution of common snook along shoreline habitats of Florida estuaries. Transactions of the American Fisheries Society, 139(1), 62-79.

2011

Flaherty, K. E., & Guenther, C. B. (2011). Seasonal distribution and abundance of blue crabs (Callinectes sapidus) in the Tampa Bay estuary. Gulf of Mexico Science, 29(2), 2.

Flaherty, K. E., & Landsberg, J. H. (2011). Effects of a persistent red tide (Karenia brevis) bloom on community structure and species-specific relative abundance of nekton in a Gulf of Mexico estuary. Estuaries and Coasts, 34(2), 417-439.

Idelberger, C. F., Stafford, C. J., & Erickson, S. E. (2011). Distribution and abundance of introduced fishes in Florida's Charlotte Harbor estuary. Gulf and Caribbean Research, 23(1), 13-22.

Martin, S. B., & Leberg, P. L. (2011). Influence of environmental stress on age-and size-at-maturity: genetic and plastic responses of coastal marsh fishes to changing salinities. Canadian Journal of Fisheries and Aquatic Sciences, 68(12), 2121-2131.

McBride, R. S., & Matheson, R. E. (2011). Florida's diadromous fishes: biology, ecology, conservation, and management. Florida Scientist, 74, 187-213.

Nam, D. H., Adams, D. H., Reyier, E. A., & Basu, N. (2011). Mercury and selenium levels in lemon sharks (Negaprion brevirostris) in relation to a harmful red tide event. Environmental Monitoring and Assessment, 176(1), 549-559.

Poulakis, G. R., Stevens, P. W., Timmers, A. A., Wiley, T. R., & Simpfendorfer, C. A. (2011). Abiotic affinities and spatiotemporal distribution of the endangered smalltooth sawfish, Pristis pectinata, in a south-western Florida nursery. Marine and Freshwater Research, 62(10), 1165-1177.

Reyier, E. A., Lowers, R. H., Scheidt, D. M., & Adams, D. H. (2011). Movement patterns of adult red drum, Sciaenops ocellatus, in shallow Florida lagoons as inferred through autonomous acoustic telemetry. Environmental Biology of Fishes, 90(4), 343-360.

Simpfendorfer, C. A., Yeiser, B. G., Wiley, T. R., Poulakis, G. R., Stevens, P. W., & Heupel, M. R. (2011). Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring. PLoS One, 6(2), e16918.

Topping, D. T., & Szedlmayer, S. T. (2011). Site fidelity, residence time and movements of red snapper Lutjanus campechanus estimated with long-term acoustic monitoring. Marine Ecology Progress Series, 437, 183-200.

2012

Adams, D. H., & Paperno, R. (2012). Stable isotopes and mercury in a model estuarine fish: multibasin comparisons with water quality, community structure, and available prey base. Science of the Total Environment, 414, 445-455.

Greenwood, M. F. (2012). Assessing Effects of the Nonindigenous Pike Killifish on Indigenous Fishes in Tampa Bay, Florida, Using a Weighted‐Evidence Approach. Transactions of the American Fisheries Society, 141(1), 84-99.

Guenther, C. B., & MacDonald, T. C. (2012). Comparison of estuarine salinity gradients and associated nekton community change in the lower St. Johns River Estuary. Estuaries and Coasts, 35(6), 1443-1452..

Harris, R., Pollman, C., Landing, W., Evans, D., Axelrad, D., Hutchinson, D., ... & Sunderland, E. (2012). Mercury in the Gulf of Mexico: Sources to receptors. Environmental Research, 119, 42-52.

Milbrandt, E. C., Bartleson, R. D., Coen, L. D., Rybak, O., Thompson, M. A., DeAngelo, J. A., & Stevens, P. W. (2012). Local and regional effects of reopening a tidal inlet on estuarine water quality, seagrass habitat, and fish assemblages. Continental Shelf Research, 41, 1-16.

Norton, S. L., Wiley, T. R., Carlson, J. K., Frick, A. L., Poulakis, G. R., & Simpfendorfer, C. A. (2012). Designating critical habitat for juvenile endangered smalltooth sawfish in the United States. Marine and Coastal Fisheries, 4(1), 473-480.

Scharer, R. M., Patterson III, W. F., Carlson, J. K., & Poulakis, G. R. (2012). Age and growth of endangered smalltooth sawfish (Pristis pectinata) verified with LA-ICP-MS analysis of vertebrae. PloS ONE, 7(10): e47850.

Switzer, T. S., MacDonald, T. C., McMichael Jr, R. H., & Keenan, S. F. (2012). Recruitment of juvenile Gags in the eastern Gulf of Mexico and factors contributing to observed spatial and temporal patterns of estuarine occupancy. Transactions of the American Fisheries Society, 141(3), 707-719.

Tremain, D. M., & Adams, D. H. (2012). Mercury in groupers and sea basses from the Gulf of Mexico: relationships with size, age, and feeding ecology. Transactions of the American Fisheries Society, 141(5), 1274-1286.

2013

Adams, D. H., & Sonne, C. (2013). Mercury and histopathology of the vulnerable goliath grouper, Epinephelus itajara, in US waters: a multi-tissue approach. Environmental Research, 126, 254-263.

Blewett, D. A., & Stevens, P. W. (2013). The effects of environmental disturbance on the abundance of two recreationally-important fishes in a subtropical floodplain river. Florida Scientist, 76, 191-197.

Blewett, D. A., Stevens, P. W., & Call, M. E. (2013). Comparative ecology of euryhaline and freshwater predators in a subtropical floodplain river. Florida Scientist, 76, 166-190.

Call, M. E., Sechler, D. R., Canter, S., & Stevens, P. W. (2013). Freshwater fish communities and habitat use in the Peace River, Florida. Florida Scientist, 76, 150-165.

Flaherty, K. E., Winner, B. L., Vecchio, J. L., & Switzer, T. S. (2013). Spatial and size distribution of Red Drum caught and released in Tampa Bay, Florida, and factors associated with post-release hooking mortality. Gulf and Caribbean Research, 25(1), 29-41.

Flaherty, K. E., Matheson, R. E., McMichael, R. H., & Perry, W. B. (2013). The influence of freshwater on nekton community structure in hydrologically distinct basins in northeastern Florida Bay, FL, USA. Estuaries and Coasts, 36(5), 918-939.

Gorecki, R., & Davis, M. B. (2013). Seasonality and spatial variation in nekton assemblages of the Lower Apalachicola River. Southeastern Naturalist, 12(1), 171-196.

Poulakis, G. R., Stevens, P. W., Timmers, A. A., Stafford, C. J., & Simpfendorfer, C. A. (2013). Movements of juvenile endangered smalltooth sawfish, Pristis pectinata, in an estuarine river system: use of non-main-stem river habitats and lagged responses to freshwater inflow-related changes. Environmental Biology of Fishes, 96(6), 763-778.

Poulakis, G. R. (2013). Reproductive biology of the cownose ray in the Charlotte Harbor estuarine system, Florida. Marine and Coastal Fisheries, 5(1), 159-173.

Stevens, P. W., Greenwood, M. F., & Blewett, D. A. (2013). Fish assemblages in the oligohaline stretch of a southwest Florida river during periods of extreme freshwater inflow variation. Transactions of the American Fisheries Society, 142(6), 1644-1658.

2014

Adams, D. H., & Engel, M. E. (2014). Mercury, lead, and cadmium in blue crabs, Callinectes sapidus, from the Atlantic coast of Florida, USA: a multipredator approach. Ecotoxicology and Environmental Safety, 102, 196-201.

Blewett, D. A., & Stevens, P. W. (2014). Temperature variability in a subtropical estuary and implications for Common Snook Centropomus undecimalis, a cold-sensitive fish. Gulf of Mexico Science, 32(1), 4.

De Angelo, J. A., Stevens, P. W., Blewett, D. A., & Switzer, T. S. (2014). Fish assemblages of shoal-and shoreline-associated seagrass beds in eastern Gulf of Mexico estuaries. Transactions of the American Fisheries Society, 143(4), 1037-1048.

Flaherty, K. E., Switzer, T. S., Winner, B. L., & Keenan, S. F. (2014). Regional correspondence in habitat occupancy by Gray Snapper (Lutjanus griseus) in estuaries of the southeastern United States. Estuaries and Coasts, 37(1), 206-228.

Hall-Scharf, B. J., & Stallings, C. D. (2014). Experimental test of preference by a generalist piscivore on morphologically-and behaviorally-different prey. Journal of Experimental Marine Biology and Ecology, 460, 193-196.

Poulakis, G. R., & Grier, H. J. (2014). Ontogenetic testicular development and spermatogenesis in rays: the Cownose Ray, Rhinoptera bonasus, as a model. Environmental Biology of Fishes, 97(9), 1013-1029.

Tremain, D. M., & O'Donnell, K. E. (2014). Total mercury levels in invasive lionfish, Pterois volitans and Pterois miles (Scorpaenidae), from Florida waters. Bulletin of Marine Science, 90(2), 565-578.

Waters, J. D., Coelho, R., Fernandez‐Carvalho, J., Timmers, A. A., Wiley, T., Seitz, J. C., ... & Poulakis, G. R. (2014). Use of encounter data to model spatio‐temporal distribution patterns of endangered smalltooth sawfish, Pristis pectinata, in the western Atlantic. Aquatic Conservation: Marine and Freshwater Ecosystems, 24(6), 760-776.

Winner, B. L., Flaherty-Walia, K. E., Switzer, T. S., & Vecchio, J. L. (2014). Multidecadal evidence of recovery of nearshore red drum stocks off west-central Florida and connectivity with inshore nurseries. North American Journal of Fisheries Management, 34(4), 780-794.

2015

Campbell, M. D., Pollack, A. G., Gledhill, C. T., Switzer, T. S., & DeVries, D. A. (2015). Comparison of relative abundance indices calculated from two methods of generating video count data. Fisheries Research, 170, 125-133.

Chagaris, D., Mahmoudi, B., Muller‐Karger, F., Cooper, W., & Fischer, K. (2015). Temporal and spatial availability of Atlantic Thread Herring, Opisthonema oglinum, in relation to oceanographic drivers and fishery landings on the Florida Panhandle. Fisheries Oceanography, 24(3), 257-273.

Flaherty-Walia, K. E., Switzer, T. S., Winner, B. L., J. Tyler-Jedlund, A., & Keenan, S. F. (2015). Improved ability to characterize recruitment of Gray Snapper in three Florida estuaries along the Gulf of Mexico through targeted sampling of polyhaline seagrass beds. Transactions of the American Fisheries Society, 144(5), 911-926.

Flaherty-Walia, K. E., Matheson, R. E., & Paperno, R. (2015). Juvenile spotted seatrout (Cynoscion nebulosus) habitat use in an eastern Gulf of Mexico estuary: the effects of seagrass bed architecture, seagrass species composition, and varying degrees of freshwater influence. Estuaries and Coasts, 38(1), 353-366.

Lowerre-Barbieri, S., Crabtree, L., Switzer, T., Burnsed, S. W., & Guenther, C. (2015). Assessing reproductive resilience: an example with South Atlantic red snapper Lutjanus campechanus. Marine Ecology Progress Series, 526, 125-141.

Stallings, C. D., Nelson, J. A., Rozar, K. L., Adams, C. S., Wall, K. R., Switzer, T. S., ... & Hollander, D. J. (2015). Effects of preservation methods of muscle tissue from upper-trophic level reef fishes on stable isotope values (δ13C and δ15N). PeerJ, 3, e874.

Switzer, T. S., Chesney, E. J., & Baltz, D. M. (2015). Habitat use by juvenile red snapper in the northern Gulf of Mexico: ontogeny, seasonality, and the effects of hypoxia. Transactions of the American Fisheries Society, 144(2), 300-314.

Switzer, T. S., Keenan, S. F., Stevens, P. W., McMichael Jr, R. H., & MacDonald, T. C. (2015). Incorporating ecology into survey design: monitoring the recruitment of age-0 gags in the eastern Gulf of Mexico. North American Journal of Fisheries Management, 35(6), 1132-1143.

Switzer, T. S., Tremain, D. M., Keenan, S. F., Stafford, C. J., Parks, S. L., & McMichael Jr, R. H. (2015). Temporal and spatial dynamics of the lionfish invasion in the eastern Gulf of Mexico: perspectives from a broadscale trawl survey. Marine and Coastal Fisheries, 7(1), 1-8.

Tremain, D. M., & Schaefer, A. M. (2015). Mercury concentrations in the prey of apex piscivores from a large subtropical estuary. Marine Pollution Bulletin, 95(1), 433-444.

Tyler-Jedlund, A. J., & Torres, J. J. (2015). Age, growth, and reproduction of the littlehead porgy, Calamus proridens, from the eastern Gulf of Mexico. Bulletin of Marine Science, 91(2), 101-123.

2016

Chacin, D. H., Switzer, T. S., Ainsworth, C. H., & Stallings, C. D. (2016). Long-term analysis of spatio-temporal patterns in population dynamics and demography of juvenile Pinfish (Lagodon rhomboides). Estuarine, Coastal and Shelf Science, 183, 52-61.

Flaherty-Walia, K. E., Winner, B. L., Tyler-Jedlund, A. J., & Davis, J. P. (2016). Short-term discard mortality estimates for Gray Snapper in a West-Central Florida estuary and adjacent nearshore Gulf of Mexico waters. North American Journal of Fisheries Management, 36(2), 329-340.

Hall-Scharf, B. J., Switzer, T. S., & Stallings, C. D. (2016). Ontogenetic and long-term diet shifts of a generalist juvenile predatory fish in an urban estuary undergoing dramatic changes in habitat availability. Transactions of the American Fisheries Society, 145(3), 502-520.

Idelberger, C. F., Stevens, P. W., & Weather, E. (2016). Fishes of the Lemon Bay estuary and a comparison of fish community structure to nearby estuaries along Florida's Gulf coast. Florida Scientist, 79, 159-177.

O'Leary, S. J., Martinez, C. M., Baumann, H., Abercrombie, D. L., Conover, D. O., Poulakis, G. R., ... & Chapman, D. D. (2016). Population genetics and geometric morphometrics of the key silverside, Menidia conchorum, a marine fish in a highly-fragmented, inland habitat. Bulletin of Marine Science, 92(1), 33-50.

Poulakis, G. R., Stevens, P. W., Timmers, A. A., Stafford, C. J., Chapman, D. D., Feldheim, K. A., ... & Curtis, C. (2016). Long-term site fidelity of endangered small-tooth sawfish (Pristis pectinata) from different mothers. Fishery Bulletin, 114:461-475.

Rademacher, K. R., Campbell, M. D., Gledhill, C. T., Fitzhugh, G., Driggers, W. B., Caillouet, R., & Switzer, T. S. (2016). Male color phase in gag: implications for monitoring sex ratio via visual underwater surveys and port sample observations. Bulletin of Marine Science, 92(3), 305-319.

Stevens, P. W., Blewett, D. A., Boucek, R. E., Rehage, J. S., Winner, B. L., Young, J. M., ... & Paperno, R. (2016). Resilience of a tropical sport fish population to a severe cold event varies across five estuaries in southern Florida. Ecosphere, 7(8), e01400.

Whaley, S. D., Christman, M., & Burd, J. J. (2016). Spatial distribution–abundance relationships in juvenile (age 0) red drum (Sciaenops ocellatus) and spotted seatrout (Cynoscion nebulosus). I: influence of freshwater inflow. Estuaries and coasts, 39(3), 742-751.

2017

Blewett, D. A., Stevens, P. W., & Carter, J. (2017). Ecological effects of river flooding on abundance and body condition of a large, euryhaline fish. Marine Ecology Progress Series, 563, 211-218.

Feldheim, K. A., Fields, A. T., Chapman, D. D., Scharer, R. M., & Poulakis, G. R. (2017). Insights into reproduction and behavior of the smalltooth sawfish Pristis pectinata. Endangered Species Research, 34, 463-471.

Flaherty-Walia, K. E., Pittinger, B., Switzer, T. S., & Keenan, S. F. (2017). Seagrass habitats as nurseries for reef-associated fish: evidence from fish assemblages in and adjacent to a recently established no-take marine reserve in dry Tortugas National Park, Florida, USA. Gulf and Caribbean Research, 28(1), 15-28.

Gandy, D. A., & Rehage, J. S. (2017). Examining gradients in ecosystem novelty: fish assemblage structure in an invaded Everglades canal system. Ecosphere, 8(1), e01634.

Greenwood, M. F. (2017). Distribution, spread, and habitat predictability of a small, invasive, piscivorous fish in an important estuarine fish nursery. Fishes, 2(2), 6.

Huston, C. A., Stevens, P. W., Blaxton, R. M., Tolley, S. G., Scharer, R. M., Tornwall, B. M., & Poulakis, G. R. (2017). Diel movements of juvenile smalltooth sawfish: implications for defining the size of a nursery hotspot. Endangered Species Research, 34, 311-322.

Matheson Jr, R. E., Flaherty-Walia, K. E., Switzer, T. S., & McMichael Jr, R. H. (2017). The importance of time of day in structuring demersal ichthyofaunal assemblages on the West Florida Shelf. Bulletin of Marine Science, 93(2), 407-437.

O'Bryhim, J. R., Adams, D. H., Spaet, J. L., Mills, G., & Lance, S. L. (2017). Relationships of mercury concentrations across tissue types, muscle regions and fins for two shark species. Environmental Pollution, 223, 323-333.

Scharer, R. M., Stevens, P. W., Shea, C. P., & Poulakis, G. R. (2017). All nurseries are not created equal: large-scale habitat use patterns in two smalltooth sawfish nurseries. Endangered Species Research, 34, 473-492.

Winner, B. L., MacDonald, T. C., & Amendola, K. B. (2017). Age and growth of sheepshead (Archosargus probatocephalus) in Tampa Bay, Florida. Fishery Bulletin, 115(2).

2018

Adams, D. H., Tremain, D. M., & Evans, D. W. (2018). Large-scale assessment of mercury in sentinel estuarine fishes of the Florida Everglades and adjacent coastal ecosystems. Bulletin of Marine Science, 94(4), 1413-1427.

Adams, D. H. (2018). Mercury in cobia from estuarine and offshore waters of the southeastern United States: Fisheries Implications. Transactions of the American Fisheries Society, 147(2), 363-369.

Bakenhaster, M. D., Bullard, S. A., Curran, S. S., Kritsky, D. C., Leone, E. H., Partridge, L. K., ... & Poulakis, G. R. (2018). Parasite component community of smalltooth sawfish off Florida: diversity, conservation concerns, and research applications. Endangered Species Research, 35, 47-58.

Campbell, J. E., Altieri, A. H., Johnston, L. N., Kuempel, C. D., Paperno, R., Paul, V. J., & Duffy, J. E. (2018). Herbivore community determines the magnitude and mechanism of nutrient effects on subtropical and tropical seagrasses. Journal of Ecology, 106(1), 401-412.

Douglass, J. G., Paperno, R., Reyier, E. A., & Hines, A. H. (2018). Fish and seagrass communities vary across a marine reserve boundary, but seasonal variation in small fish abundance overshadows top-down effects of large consumer exclosures. Journal of Experimental Marine Biology and Ecology, 507, 39-52.

Grüss, A., Perryman, H. A., Babcock, E. A., Sagarese, S. R., Thorson, J. T., Ainsworth, C. H., ... & Switzer, T. S. (2018). Monitoring programs of the US Gulf of Mexico: inventory, development and use of a large monitoring database to map fish and invertebrate spatial distributions. Reviews in Fish Biology and Fisheries, 28(4), 667-691.

Paperno, R., Dutka-Gianelli, J., & Tremain, D. (2018). Seasonal variation in nekton assemblages in tidal and nontidal tributaries in a barrier island lagoon system. Estuaries and Coasts, 41(6), 1821-1833.

Prohaska, B. K., Bethea, D. M., Poulakis, G. R., Scharer, R. M., Knotek, R., Carlson, J. K., & Grubbs, R. D. (2018). Physiological stress in the smalltooth sawfish: effects of ontogeny, capture method, and habitat quality. Endangered Species Research, 36, 121-135.

Schrandt, M. N., Switzer, T. S., Stafford, C. J., Flaherty-Walia, K. E., Paperno, R., & Matheson Jr, R. E. (2018). Similar habitats, different communities: Fish and large invertebrate assemblages in eastern Gulf of Mexico polyhaline seagrasses relate more to estuary morphology than latitude. Estuarine, Coastal and Shelf Science, 213, 217-229.

Stevens, P. W., Boucek, R. E., Trotter, A. A., Ritch, J. L., Johnson, E. R., Shea, C. P., ... & Rehage, J. S. (2018). Illustrating the value of cross-site comparisons: Habitat use by a large, euryhaline fish differs along a latitudinal gradient. Fisheries Research, 208, 42-48.

2019

Brame, A. B., Wiley, T. R., Carlson, J. K., Fordham, S. V., Grubbs, R. D., Osborne, J., ... & Poulakis, G. R. (2019). Biology, ecology, and status of the smalltooth sawfish Pristis pectinata in the USA. Endangered Species Research, 39, 9-23.

Camp, E. V., Ahrens, R. N., MacDonald, T. C., Thompson, K. A., & Lorenzen, K. (2019). Identifying forage populations of concern: A new perspective based on predator recruitment considerations. Fisheries Research, 219, 105319.

Faletti, M. E., Chacin, D. H., Peake, J. A., MacDonald, T. C., & Stallings, C. D. (2019). Population dynamics of Pinfish in the eastern Gulf of Mexico (1998-2016). Plos ONE, 14(8), e0221131.

Hancock, T. L., Poulakis, G. R., Scharer, R. M., Tolley, S. G., & Urakawa, H. (2019). High-resolution molecular identification of smalltooth sawfish prey. Scientific Reports, 9(1), 1-9.

Kurth, B. N., Peebles, E. B., & Stallings, C. D. (2019). Atlantic Tarpon (Megalops atlanticus) exhibit upper estuarine habitat dependence followed by foraging system fidelity after ontogenetic habitat shifts. Estuarine, Coastal and Shelf Science, 225, 106248.

Lear, K. O., Poulakis, G. R., Scharer, R. M., Gleiss, A. C., & Whitney, N. M. (2019). Fine-scale behavior and habitat use of the endangered smalltooth sawfish (Pristis pectinata): insights from accelerometry. Fishery Bulletin, 117(4), 348-359.

May, R. K., Tolley S.G., Scharer R.M., Dye B., Jose F., and Poulakis, G.R. (2019). Automated Monitoring of Fine-Scale Movements of the Endangered Smalltooth Sawfish (Pristis pectinata) (Doctoral dissertation, Florida Gulf Coast University). Fishery Bulletin, 117:360-371.

Soulen, B. K., Adams, D. H., & Roberts, A. P. (2019). Mercury accumulation, speciation, and temporal trends in Atlantic Stingrays (Hypanus sabinus). Ecotoxicology, 28(3), 251-260.

Troast, B., Paperno, R., & Cook, G. S. (2020). Multidecadal shifts in fish community diversity across a dynamic biogeographic transition zone. Diversity and Distributions, 26(1), 93-107.

2020

Borucinska, J., Adams, D. H., & Frazier, B. S. (2020). Histologic observations of dermal wound healing in a free ranging blacktip shark Carcharhinus limbatus from the southeastern US Atlantic coast: a case report. Journal of Aquatic Animal Health. 32, 141-148.

Christiansen, H. M., Switzer, T. S., Keenan, S. F., Tyler‐Jedlund, A. J., & Winner, B. L. (2020). Assessing the Relative Selectivity of Multiple Sampling Gears for Managed Reef Fishes in the Eastern Gulf of Mexico. Marine and Coastal Fisheries, 12(5), 322-338.

Grüss, A., Thorson, J. T., Carroll, G., Ng, E. L., Holsman, K. K., Aydin, K., ... & Thompson, K. A. (2020). Spatio‐temporal analyses of marine predator diets from data‐rich and data‐limited systems. Fish and Fisheries, 21(4), 718-739.

Lehman, R. N., Poulakis, G. R., Scharer, R. M., Schweiss, K. E., Hendon, J. M., & Phillips, N. M. (2020). An environmental DNA tool for monitoring the status of the Critically Endangered Smalltooth Sawfish, Pristis pectinata, in the western Atlantic. Conservation Genetics Resources, 12(4), 621-629.

Lowerre-Barbieri, S., Menendez, H., Bickford, J., Switzer, T. S., Barbieri, L., & Koenig, C. (2020). Testing assumptions about sex change and spatial management in the protogynous gag grouper, Mycteroperca microlepis. Marine Ecology Progress Series, 639, 199-214.

Purtlebaugh, C. H., Martin, C. W., & Allen, M. S. (2020). Poleward expansion of common snook Centropomus undecimalis in the northeastern Gulf of Mexico and future research needs. PLoS ONE, 15(6), e0234083.

Ramos-Tafur, G. E., Thompson, K. A., Knight-Gray, J., Hall-Scharf, B. J., Chagaris, D. D., Switzer, T. S., ... & McMichael Jr, R. H. (2020). Focus-stacked images of fish jawbones for stomach content analyses: A case study with select taxa from Tampa Bay, Florida. Gulf and Caribbean Research, 31(1), SC1-SC5.

Schrandt, M. N., & MacDonald, T. C. (2020). Long-term stability of the faunal community of a subtropical estuary: evaluating disturbances in the context of interannual variability. Estuaries and Coasts, 43(2), 347-359.

Solomon, J. J., Carroll, J., Lazarre, D., Brodie, R. B., Christiansen, H., Sauls, B., ... & Switzer, T. S. Size and age composition of Red Snapper, Lutjanus campechanus, collected in association with fishery-independent and fishery-dependent projects along Florida’s Atlantic coast, 2012 to 2019. SEDAR73-WP13. SEDAR, North Charleston, SC. 44 pp.

Switzer, T. S., Tyler‐Jedlund, A. J., Keenan, S. F., & Weather, E. J. (2020). Benthic Habitats, as Derived from Classification of Side‐Scan‐Sonar Mapping Data, Are Important Determinants of Reef‐Fish Assemblage Structure in the Eastern Gulf of Mexico. Marine and Coastal Fisheries, 12(1), 21-32.

2021

Beck, M. W., Schrandt, M. N., Wessel, M. R., Sherwood, E. T., Raulerson, G. E., Prasad, A. A. B., & Best, B. D. (2021). tbeptools: An R package for synthesizing estuarine data for environmental research. Journal of Open Source Software, 6(65), 3485.

Blewett, D. A., Stevens, P. W., Shea, C. P., Oliver, J. C., & Johnson, E. R. (2021). Hydrogeomorphic Differences between Proximate Rivers Affect Use by Large Predatory Fishes. Southeastern Naturalist, 20(3), 477-497.

Friess, C., Lowerre-Barbieri, S. K., Poulakis, G. R., Hammerschlag, N., Gardiner, J. M., Kroetz, A. M., ... & Griffin, L. P. (2021). Regional-scale variability in the movement ecology of marine fishes revealed by an integrative acoustic tracking network. Marine Ecology Progress Series, 663, 157-177.

Graham, J., Kroetz, A. M., Poulakis, G. R., Scharer, R. M., Carlson, J. K., Lowerre-Barbieri, S., ... & Grubbs, R. D. (2021). Large-scale space use of large juvenile and adult smalltooth sawfish Pristis pectinata: implications for management. Endangered Species Research, 44, 45-59.

Hart, H. R., Crowley, C. E., & Walters, E. A. (2021). Blue Crab Spawning and Recruitment in Two Gulf Coast and Two Atlantic Estuaries in Florida. Marine and Coastal Fisheries, 13(2), 113-130.

Ilich, A. R., Brizzolara, J. L., Grasty, S. E., Gray, J. W., Hommeyer, M., Lembke, C., ... & Murawski, S. A. (2021). Integrating towed underwater video and multibeam acoustics for marine benthic habitat mapping and fish population estimation. Geosciences, 11(4), 176.

Lewis, D. M., Thompson, K. A., MacDonald, T. C., & Cook, G. S. (2021). Understanding shifts in estuarine fish communities following disturbances using an ensemble modeling framework. Ecological Indicators, 126, 107623.

Lopez, C. B., Tilney, C. L., Muhlbach, E., Bouchard, J. N., Villac, M. C., Henschen, K. L., ... & Hubbard, K. A. (2021). High-Resolution Spatiotemporal Dynamics of Harmful Algae in the Indian River Lagoon (Florida)—A Case Study of Aureoumbra lagunensis, Pyrodinium bahamense, and Pseudo-nitzschia. Frontiers in Marine Science, 8, 769877.

Murawski, S. A., Kilborn, J. P., Bejarano, A. C., Chagaris, D., Donaldson, D., Hernandez Jr, F. J., ... & Robinson, K. L. (2021). A synthesis of Deepwater Horizon impacts on coastal and nearshore living marine resources. Frontiers in Marine Science, 7, 1212.

Schrandt, M. N., MacDonald, T. C., Sherwood, E. T., & Beck, M. W. (2021). A multimetric nekton index for monitoring, managing and communicating ecosystem health status in an urbanized Gulf of Mexico estuary. Ecological Indicators, 123, 107310.

Schrandt, M. N., Shea, C. P., Kurth, B. N., & Switzer, T. S. (2021). Amending survey design to improve statistical inferences: Monitoring recruitment of juvenile reef fish in the eastern Gulf of Mexico. Fisheries Research, 241, 106015.

zu Ermgassen, P. S., DeAngelis, B., Gair, J. R., Ermgassen, S. Z., Baker, R., Daniels, A., ... & Grabowski, J. H. (2021). Estimating and applying fish and invertebrate density and production enhancement from seagrass, salt marsh edge, and oyster reef nursery habitats in the Gulf of Mexico. Estuaries and Coasts, 44(6), 1588-1603.

2022

Abbe, S. K., K. Henschen, L. Markley, C. Villac, e. Muhlbach, C. Tilney, A. Hoeglund, Y. Gao, A. Biddle, R. Paperno, L. Johnson, T. Saam, J. Torpey, C. Wallace, T. Moore, M. McFarland, C. Swanson, and K. Hubbard. 2022. Tracking a novel cyanobacterium bloom in the Indian River Lagoon, FL, U.S.A., during the summer and fall of 2020. 19th International Conference on Harmful Algae. La Paz, B.C.S., Mexico. 106-111.

Adams, D. H., A. Sebastian, and R. Paperno. 2022. Population decline of Gulf pipefish (Syngnathus scovelli) in a subtropical estuary: ecosystem changes and habitat loss. Marine Biodiversity 52(5),57.

Boucek, R. E., Allen, M. S., Ellis, R. D., Estes, J., Lowerre-Barbieri, S., & Adams, A. J. (2022). An extreme climate event and extensive habitat alterations cause a non-linear and persistent decline to a well-managed estuarine fishery. Environmental Biology of Fishes, 1-15.

Branham, C. C., Frazier, B. S., Strange, J. B., Galloway, A. S., Adams, D. H., Drymon, J. M., ... & Sancho, G. (2022). Diet of the bonnethead (Sphyrna tiburo) along the northern Gulf of Mexico and southeastern Atlantic coast of the United States. Animal Biodiversity and Conservation, 45(2), 257-267.

Brodie, R. B., Solomon, J. J., Paperno, R., Switzer, T. S., & Swanson, C. E. (2022). Development of Survey Methods to Effectively Sample Juvenile Red Snapper along the Atlantic Coast of Florida. Transactions of the American Fisheries Society, 151:571-586.

Campbell, M. D., Pollack, A. G., Thompson, K., Switzer, T., Driggers, W. B., Hoffmayer, E. R., ... & Overly, K. (2022). Rapid spatial expansion and population increase of invasive lionfish (Pterois spp.) observed on natural habitats in the northern Gulf of Mexico. Biological Invasions, 24(1), 93-105.

Christiansen, H. M., Solomon, J. J., Switzer, T. S., & Brodie, R. B. (2022). Assessing the size selectivity of capture gears for reef fishes using paired stereo-baited remote underwater video. Fisheries Research, 249, 106234.

Christiansen, H. M., Tyler‐Jedlund, A. J., Switzer, T. S., Keenan, S. F., & Stahl, S. D. (2022). Potential Implications of Excluding Live‐Bottom Habitat from a Bottom‐Trawl Survey in the Eastern Gulf of Mexico. North American Journal of Fisheries Management. 42(4), 893-905.

Gorecki, R., Schrandt, M. N., & Switzer, T. S. (2022). Evidence of shared trends in juvenile fish recruitment to nearshore seagrass habitats of the eastern Gulf of Mexico. Marine Ecology Progress Series, 694, 157-174.

Graham, J., Kroetz, A. M., Poulakis, G. R., Scharer, R. M., Carlson, J. K., Lowerre‐Barbieri, S. K., ... & Grubbs, R. D. (2022). Commercial fishery bycatch risk for large juvenile and adult smalltooth sawfish (Pristis pectinata) in Florida waters. Aquatic Conservation: Marine and Freshwater Ecosystems, 32(3), 401-416.

Hall, L. M., Morris, L. J., Chamberlain, R. H., Hanisak, M. D., Virnstein, R. W., Paperno, R., ... & Jacoby, C. A. (2022). Spatiotemporal Patterns in the Biomass of Drift Macroalgae in the Indian River Lagoon, Florida, United States. Frontiers in Marine Science, 9:767440.

Keenan, S. F., Switzer, T. S., Knapp, A., Weather, E. J., & Davis, J. (2022). Spatial dynamics of the quantity and diversity of natural and artificial hard bottom habitats in the eastern Gulf of Mexico. Continental Shelf Research, 233, 104633.

Kumar, G., Reaume, A. M., Farrell, E., & Gaither, M. R. (2022). Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary. PloS ONE, 17(6), e0266720.

Lehman, R. N., Poulakis, G. R., Scharer, R. M., Hendon, J. M., Court, A. G., Wooley, A. K., ... & Phillips, N. M. (2022). Environmental DNA evidence of the Critically Endangered smalltooth sawfish, Pristis pectinata, in historically occupied US waters. Aquatic Conservation: Marine and Freshwater Ecosystems, 32(1), 42-54.

Michaud, B. C., Kilborn, J. P., MacDonald, T. C., & Peebles, E. B. (2022). A description of Florida estuarine gradient complexes and the implications of habitat factor covariation for community habitat analysis. Estuarine, Coastal and Shelf Science, 264, 107669.

Nehemiah, S., Chagaris, D., Lowerre‐Barbieri, S., & Allen, M. (2022). Environmental Factors and Stock Abundance Influence Year‐Class Strength of Spotted Seatrout at Cedar Key, Florida. Marine and Coastal Fisheries, 14(2), e10201.

Peake, J. A., MacDonald, T. C., Thompson, K. A., & Stallings, C. D. (2022). Community dynamics of estuarine forage fishes are associated with a latitudinal basal resource regime. Ecosphere, 13(5), e4038.

Sinnickson, D., Chagaris, D., & Allen, M. (2021). Exploring impacts of river discharge on forage fish and predators using ecopath with ecosim. Frontiers in Marine Science, 8, 689950.

Stevens, P. W., Paperno, R., Beal, J. L., MacDonald, T. C., Miller, H. N., Klarmann, P. A., & Malinowski, C. R. (2022). Identification of fish habitat hotspots for use in prioritizing conservation and restoration projects in coastal rivers. Environmental Biology of Fishes, 1-15.

Thompson, K. A., Switzer, T. S., Christman, M. C., Keenan, S. F., Gardner, C. L., Overly, K. E., & Campbell, M. D. (2022). A novel habitat-based approach for combining indices of abundance from multiple fishery-independent video surveys. Fisheries Research, 247, 106178.

Walton, B. W., Cotton, C. F., Gandy, D. A., & Fuentes, M. M. (2022). Determining the influence of abiotic factors on spatial–temporal patterns of marine catfish (family: Ariidae) within the Apalachicola Bay System, Florida. Environmental Biology of Fishes, 105(3), 369-383.

Wilson, J. K., Stevens, P. W., Blewett, D. A., Boucek, R., & Adams, A. J. (2022). A new approach to define an economically important fish as an umbrella flagship species to enhance collaborative stakeholder-management agency habitat conservation. Environmental Biology of Fishes, 1-18.

Winner, B. L., Switzer, T. S., Keenan, S. F., Purtlebaugh, C. H., Christiansen, H., & Davis, J. (2022). A Habitat‐Based, Fishery‐Independent Survey Using Actively Fished Hooked Gear Successfully Characterizes Reef Fish Populations in the Eastern Gulf of Mexico. North American Journal of Fisheries Management.

2023

Burton, Michael L. et al. 2023. A Climate vulnerability assessment for fish and invertebrates in the United States South Atlantic large marine ecosystem. NOAA Technical Memorandum NMFS-SEFSC-768, 408 p.

Flaherty-Walia, K. E., C. L. Gervasi, J. P. Davis, S. Trabelsi, Z. Fratto, R. O. Santos, P. W. Stevens, R. E. Matheson, Jr., J. S. Rehage. 2023. Seines and baited remote underwater video document consistent spatiotemporal patterns in nekton communities of subtropical coastal habitats. Mar. Ecol. Prog. Ser. 722:37-64.

Flaherty-Walia KE, Williams BJ. Nekton communities associated with natural and artificial hard bottom habitats in a subtropical estuary on the Florida Gulf of Mexico coast. Florida Scientist. 2023;86:2.

Frazier, B. S., Vinyard, E. A., Fields, A. T., Driggers III, W. B., Grubbs, R. D., Adams, D. H., ... & Portnoy, D. S. (2023). Age, Growth and Maturity of the Bonnethead Sphyrna tiburo in the US Gulf of Mexico. Environmental Biology of Fishes, 1-21.

Peterson, C. T., Gandy, D. A., & Brooke, S. D. (2023). Analysis of Nekton Communities in a Regulated River-Fed Estuary: Assessing Temporal Changes Relative to River Flow Rates in the Apalachicola Bay System, Florida. Estuaries and Coasts, 1-21.

Quinlan, John A. et. al. 2023. Results from the Gulf of Mexico Climate Vulnerability Analysis for Fishes and Invertebrates. NOAA Technical Memorandum NMFS-SEFSC-767, 342 p.

Schrandt, M. N., J. A. Peake, and T. C. MacDonald. 2023. Sport fish abundance trends in changing estuaries: the importance of spatiotemporal size refuges. Florida Sci. 86(2):107-119.

Scoulding, B., Gastauer, S., Taylor, J. C., Boswell, K. M., Fairclough, D. V., Jackson, G., ... & Fernandes, P. G. (2023). Estimating abundance of fish associated with structured habitats by combining acoustics and optics. Journal of Applied Ecology.

Smith, M., D. Chagaris, R. Paperno, and S. Markwith. 2023. Tropical estuarine ecosystem change under the interacting influences of future climate and ecosystem restoration. Global Change Biology. 29(20): 5850-65.

Smith, M., R. Paperno, K. Flaherty-Walia, and S. Markwith. 2023. Species distributions in a changing estuary: predictions under future climate change, sea‑level rise, and watershed restoration. Estuaries and Coasts 46:1590-1611.

Switzer, T. S., Keenan, S. F., Thompson, K. A., Shea, C. P., Knapp, A. R., Campbell, M. D., ... & Christman, M. C. (2023). Integrating assemblage structure and habitat mapping data into the design of a multispecies reef fish survey. Marine and Coastal Fisheries, 15(4), e10245.

Whaley, S. D., C. P. Shea, E. C. Santi, and D. A. Gandy. 2023. The influence of freshwater inflow and seascape context on occurrence of juvenile spotted seatrout Cynoscion nebulosus across a temperate estuary. PLoS ONE 18(11):e0294178.

2024

Adams DH, Edwards DD, Schneider JE, Searles AR. 2024. Range expansion and population shifts of estuarine fishes in a changing subtropical estuary. Mar Ecol Prog Ser.

Bunting, M.S., P.W. Stevens, D.A. Blewett, Q.M. Tuckett, J.E. Hill, G.R. Poulakis, C.P. Shea, and C.R. Saari. 2024. Emigration of juvenile tarpon Megalops atlanticus from ephemerally connected coastal ponds. Estuaries and Coasts. 47:2493-2509.

Long, C. A., g. A. J. Worthy, R. Paperno, S. A. Ceriani, and K. L. Mansfield. 2024. Harmful algal bloom impacts on juvenile green turtle foraging ecology: insights from stable isotope analysis. Marine Ecology Progress Series. Vol. 728:59-73. 

Love, G. D., Z. A. Siders, D. A. Gandy, W. E. Pine III, S. Baker, and E. V. Camp. 2024. Estuarine nekton community shows minimal response following large‑scale oyster reef habitat loss in Apalachicola Bay, Florida. Hydrobiologia. pp. 1-18.

Portnoy DS, O’Leary SJ, Fields AT, Hollenbeck CM, Adams DH, et al. 2024. Complex patterns of genetic population structure in the mouthbrooding marine catfish, Bagre marinus, in the Gulf of Mexico and U.S. Atlantic. Ecol Evol. 14(6):e11514.

Poulakis, G. R., J. T. Wyffels, P. E. Fortman, A. K. Wooley, L. B. Heath, D. M. Yakich, and P. W. Wilson. 2024. Morphology, composition, and deterioration of the embryonic rostral sheath of the smalltooth sawfish (Pristis pectinata). Fishery Bulletin. 122:76-88. doi: 10.7755/FB.122.3.2

Schrandt, M. N., T. C. MacDonald, B. L. Winner, D. A. Blewett, R. Paperno, G. V. Onorato, D. A. Gandy, and T. S. Switzer. 2024. Sampling design modifications to a fishery-independent monitoring survey balance the maintenance of long-term data with emerging management needs and funding limitations. Frontiers in Marine Science. 10:1199076. doi: 10.3389/fmars.2023.1199076.

Switzer, T. S., S. F. Keenan, R. T. Munnelly, S. L. Parks, B. R. Pittinger, T. K. Warner, R. E. Matherson Jr., and R. Maloney. 2024. Red snapper excavate sediments around artificial reefs: Observation of ecosystem-engineering behavior by a widely distributed lutjanid. Aquatic Biology. 33:69-74.